Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs9369558 chr6:45274021 A/C 0.000123 178 16.22 16.12 12.2 KM Plot
PAAD rs9372483 chr6:117962827 T/G 1.2E-5 178 15.57 11.78 3.67 KM Plot
PAAD rs9381383 chr6:45271893 G/A 0.000138 177 16.22 16.1 12.2 KM Plot
PAAD rs9395049 chr6:44792718 C/T 1.67E-5 178 12.42 16.13 16.6 KM Plot
PAAD rs9395095 chr6:45273877 C/A 0.000138 177 16.22 16.1 12.2 KM Plot
PAAD rs9462170 chr6:36262358 A/G 0 178 15.42 15.67 0.4 KM Plot
PAAD rs9463076 chr6:45171362 C/T 9.89E-5 178 13.13 15.57 18.03 KM Plot
PAAD rs9463081 chr6:45233108 G/A 3.33E-5 173 16.48 15.93 11.77 KM Plot
PAAD rs9463083 chr6:45272062 T/G 0.000138 177 16.22 16.1 12.2 KM Plot
PAAD rs9470245 chr6:36262382 C/T 0 178 0.4 15.67 15.42 KM Plot
PAAD rs9477985 chr6:169893743 C/T 2.33E-6 175 15.57 15.42 3.43 KM Plot
PAAD rs9478000 chr6:170034774 C/T 1.86E-6 177 15.55 15.73 3.43 KM Plot
PAAD rs9478081 chr6:170035439 T/C 1.8E-10 178 15.57 15.43 3.88 KM Plot
PAAD rs949516 chr2:54548161 C/T 1.55E-6 175 14.9 20.35 3.43 KM Plot
PAAD rs9633834 chr11:49780784 T/G 1.68E-5 177 15.4 15.72 0.4 KM Plot